Craniofacial Stem Cell Biology and Regeneration
We discover and study endogenous craniofacial stem cells to understand tissue regeneration and develop next-generation regenerative therapies.
Our laboratory investigates how stem cells maintain and regenerate craniofacial tissues throughout life. By identifying stem cell populations in cranial sutures, dental pulp, salivary glands, and the temporomandibular joint (TMJ), we seek to uncover the molecular mechanisms that govern tissue homeostasis, repair, and regeneration.
Using bioinformatics, mouse genetics, lineage tracing, and advanced molecular and cellular approaches, we study how genetic, epigenetic, and signaling networks regulate stem cell behavior during development, aging, injury, and disease. A major focus of our work is understanding how non-coding RNAs and other regulatory pathways control stem cell maintenance, differentiation, and regenerative capacity.
Our long-term goal is to develop biologically informed therapies for craniofacial abnormalities and skeletal disorders, including osteoporosis and temporomandibular joint osteoarthritis, while advancing the regeneration of bone, cartilage, and dental pulp tissues.
Current projects
Stem Cells in Craniofacial Tissues
One of the fundamental questions in biology is how tissues are maintained throughout life when most mature functional cells survive only for limited periods. Adult stem cells are thought to solve this challenge by self-renewing and continuously generating new cells, thereby maintaining tissue homeostasis and enabling regeneration after injury. Understanding how these long-lived stem cells are established, maintained, and activated during repair is central to our research program.
A major focus of our laboratory is the identification and characterization of adult stem cells in craniofacial tissues. We have discovered endogenous stem cell populations in the cranial sutures, dental pulp, and salivary gland ducts that contribute to tissue maintenance and regeneration (Nature Communications, 2016; Cell Reports, 2018; Journal of Dental Research, 2026). Using state-of-the-art mouse genetics, lineage tracing, and computational approaches, we have further defined molecular mechanisms that regulate stem cell fate decisions, self-renewal, and differentiation (JBMR, 2017; Science Translational Medicine, 2021; Science Advances, 2022).
Our current research focuses on mandibular condylar cartilage stem cells, a unique stem cell population that is essential for temporomandibular joint growth, maintenance, and regeneration. Through genetic and molecular studies, we seek to understand how these cells contribute to TMJ homeostasis and how their dysfunction leads to degenerative joint disease. These works are supported by an NIH/NIDCR R01 and R21 awards.
Non-coding RNA and Stem Cell Regulation
In addition to identifying stem cell populations, we seek to understand the molecular mechanisms that regulate their behavior. One major focus of our laboratory is the role of non-coding RNAs in stem cell maintenance, differentiation, and tissue regeneration.
Although only 2–3% of the human genome encodes proteins, more than 70% of the genome is actively transcribed into non-coding RNAs with important regulatory functions. Our laboratory investigates how non-coding RNAs regulate stem cell fate, tissue homeostasis, and regeneration. Using genetic mouse models, transcriptomic analyses, and functional studies, we seek to identify non-coding RNA networks that control craniofacial stem cell behavior and skeletal regeneration.
Our research demonstrated that deletion of microRNA-27a (Mir27a), a small non-coding RNA, results in severe osteoporotic bone loss in young mice, revealing an essential role for Mir27a in skeletal homeostasis (eLife, 2023). Building upon these findings, we are currently identifying and characterizing non-coding RNAs that regulate stem cell populations responsible for temporomandibular joint maintenance and regeneration. Through these studies, we aim to uncover novel regulatory mechanisms that can be harnessed to promote tissue regeneration and treat craniofacial diseases. These works are supported by an NIH/NIDCR R01 and R21 awards.
Alumni
- John Martinez, Lab Technician, 2019-2020
- Justin Lopes, Lab Technician, 2020-2022
- Shinichiro Yoshida, Postdoctoral fellow, 2022-2024
- Haruka Kuroda, Exchange Scholar, 2025
- Aritro Chatterjee, ADA Forsyth Summer Scholar, 2025
- Aya Noda, Exchange Schoar, 2026
Selected Publications
Representative publications from our laboratory include:
1. Maruyama T, Jeong J, Sheu TJ, Hsu W.
Stem cells of the suture mesenchyme in craniofacial bone development, repair and regeneration.
Nature Communications. 2016;7:10526.
2. Maruyama T, Stevens R, Boka A, DiRienzo L, Chang C, Yu HI, Nishimori K, Morrison C, Hsu W.
BMPR1A maintains skeletal stem cell properties in craniofacial development and craniosynostosis.
Science Translational Medicine. 2021;13.
3. Maruyama T, Hasegawa D, Valenta T, Haigh J, Bouchard M, Basler K, Hsu W.
GATA3 mediates nonclassical β-catenin signaling in skeletal cell fate determination and ectopic chondrogenesis.
Science Advances. 2022;8.
4. Wang S, Maruyama EO, Martinez J, Lopes J, Hsu T, Wu W, Hsu W, Maruyama T.
miRNA-27a is essential for bone remodeling by modulating p62-mediated osteoclast signaling.
eLife. 2023;12.
5. Yoshida S, Maruyama EO, Hsu W, Huang GT-J, Maruyama T.
Identification of Apically Localized Endogenous Dental Pulp Stem Cells.
Journal of Dental Research. 2026;105:668–676.